Gene Ther
Mol Biol Vol 3, 455-464. August 1999.
The role
of chromatin in the establishment of enhancer function during early mouse
development
Review Article
Luca Rastelli and Sadhan Majumder*
University of Texas MD Anderson
Cancer Center, Departments of Neuro-Oncology and Molecular Genetics, 1515
Holcombe Boulevard, Box 100, Houston, TX 77030, USA
__________________________________________________________________________________________________
*Corresponding author: Sadhan Majumder, Ph.D. Phone: (713) 792-8920;
Fax: (713) 792-6054; E-mail: HREF=
Key words:
transcription, enhancer function, chromatin, mammalian embryonic development
Abbreviations: ZGA, zygotic gene activation
Received:
14 October 1998; accepted 25 October 1998
Summary
In mammals, enhancers are believed to stimulate transcription from RNA
polymerase II promoters primarily by relieving their chromatin-mediated
repression. Interactions responsible for enhancer function are developmentally
acquired. Factors responsible for this repression are not present in the
paternal pronuclei of 1-cell embryos, making them impervious to enhancer
function. Although such chromatin-mediated repression is observed in oocytes,
maternal pronuclei of 1-cell embryos, and the 2-cell embryos, the enhancer
function first appears in 2-cell embryos, a stage in development that
corresponds to the beginning of major zygotic gene expression (ZGE). The lack
of enhancer function prior to 2-cell stage is also not due to the absence of
specific activation proteins, but appears to be due to the absence of an
essential coactivator activity. The coactivator activity first appears in
2-cell embryos, and is required for enhancers driven by different classes of
transcription factors. The absence of the coactivator activity and the
corresponding enhancer function appears to be unique to oocytes and 1-cell
embryos, suggesting that it provides a safeguard against premature activation
of genes prior to ZGE.
I. Introduction
Transcription by RNA polymerase II
is controlled primarily by two elements: promoters and enhancers. Promoters
determine where transcription begins, and they function upstream and proximal
to the initiation site. Enhancers stimulate weak promoters in a tissue specific
manner, and they function distal to the initiation site from either an upstream
or downstream position. Enhancers can also function as components of origins of
DNA replication (DePamphilis 1997) where their activity depends on
binding specific transcription factors that can interact with replication
proteins (He et al. 1993). However, whereas the primary
function of promoters and replication origins is to facilitate assembly of an
active initiation complex, the primary function of enhancers remains
controversial. Two models are generally considered. In the first model,
enhancers are simply extensions of promoters; enhancers and promoters both
facilitate formation of an active transcription complex with enhancers
providing additional transcription factors that can function at a greater
distance from the mRNA start site (Carey et al. 1990; Schatt et al. 1990). This model is encouraged by the
fact that the same transcription factors frequently can function as components
of either promoters or enhancers. In the second model, the primary role of an
enhancer is distinct from that of a promoter; whereas promoters facilitate
formation of an active complex, enhancers stimulate weak promoters by relieving
chromatin mediated repression of promoters, a process that might involve
histone acetylation (Grunstein 1997; Pazin and Kadonaga 1997; Roth and Allis
1996; Vermaak and Wolffe 1998; Wolffe and Pruss 1996). Support for this model comes from
analyses of gene expression and of chromatin structure in mouse preimplantation
embryos and transcription in cell free systems.
Figure 1. Schematic representation of events
at the beginning of mouse development. Upper
Panel: Morphological and cell cycle events are indicated as a function of
time after injection of human chorionic gonadotropin (post-hCG), a hormone that
stimulates ovulation. The paternal pronucleus is indicated by vertical
striations, oocyte and maternal pronucleus are denoted by horizontal
striations, and the zygotic nuclei are represented by filled circles. Addition
of aphidicolin to 1-cell embryos prior to the appearance of pronuclei insures
their morphological arrest as they enter S-phase. Lower Panel: Events in gene expression are divided into two phases:
maternal and zygotic gene expression. Periods of DNA replication, transcription
and mRNA translation are indicated by bars. The ability of oocytes and embryos
to utilize enhancers encoded in plasmid DNA injected into cell nuclei is
indicated as the general capacity of enhancers to stimulate promoter activity.
The resumption of transcription in embryos is delayed by a time-dependent
biological clock mechanism (zygotic clock).
II. Early mouse development
Relevant features of early mouse development are diagrammed in Figure 1. Growing oocytes, arrested at diplotene of the first meiotic prophase, transcribe and translate many of their own genes. Transcription stops during meiotic maturation, when unfertilized eggs arrest in metaphase of the second meiotic division. Fertilization triggers completion of meiosis and formation of a 1‑cell embryo containing a haploid paternal pronucleus derived from the sperm and a haploid maternal pronucleus derived from the oocyte. Each pronucleus then undergoes DNA replication before entering the first mitosis to produce a 2-cell embryo containing two diploid "zygotic" nuclei, each with a set of paternal and a set of maternal chromosomes.
While translation of maternally
inherited mRNAs occurs continuously in mature eggs and 1-cell embryos, 1‑cell
embryos transcribe
endogenous genes at a very low rate (Aoki et al. 1997). They can also transcribe
microinjected plamids (Ram and Schultz 1993), with the male pronucleus being 4
to 5 more active than the female (Henery et al. 1995; Majumder 1997; Wiekowski et al. 1993).
Major zygotic gene activation (ZGA; a‑amanitin sensitive protein
synthesis) begins in 2-cell embryos. Prior to S-phase only a small number of
proteins are expressed (Christians et al. 1995; Davis et al. 1996); after S-phase both the number and
overall rate of protein synthesis increases significantly (Latham et al. 1991). Concurrent with these events is a
rapid degradation of maternally inherited mRNAs, reflecting a switch from
maternal to zygotic control of embryonic development (Telford et al. 1990).
If 1-cell embryos are arrested in
S-phase using inhibitors of DNA replication, they remain morphologically 1-cell
embryos, but ZGA still occurs at the same time post-fertilization that it
normally occurs in developing embryos (i.e. the time when 2‑cell embryos
appear) (Aoki et al. 1997; Conover et al.
1991; Majumder and DePamphilis 1995; Wiekowski et al. 1991). Therefore, initiation of ZGA is
governed by a biological clock ("zygotic clock", Fig. 1) that delays transcription until a specified time after
fertilization. Other mammals also exhibit a zygotic clock, although the
developmental stage at which transcription begins is species specific. Zygotic
gene expression begins in at the 2-cell stage in mice and hamsters, the 4-cell
stage in pigs, the 4 to 8-cell stage in humans, and the 8 to 16-cell stage in sheep,
rabbits and cows (Braude et al. 1988; Ferrer et al. 1995; Schultz 1993;
Seshagiri et al. 1992).
III. Injection of DNA as a method for studying DNA
transcription and replication in early mammalian embryos
The fact that mammalian embryos are
available in limited quantities places a serious roadblock in front of any
effort to identify cis-acting sequences and trans-acting factors that are
required for DNA transcription or replication at the beginning of mammalian
development. One solution to this problem has been to inject plasmid DNA into
the nuclei present in oocytes, 1-cell embryos, or 2-cell embryos (Fig. 1) and then identify sequences that are required to either
replicate the plasmid or express an encoded reporter gene. These transient
assays, like those used following transfection of cultured mammalian cells,
reveal the capacity of cells to replicate or express genes, their ability to
respond to specific cis-acting sequences, and their ability to utilize specific
trans-acting factors provided by co-injecting expression vectors (Majumder 1997). A variety of promoters and
enhancers or transactivators have been examined in mice or rabbits. These
include promoters for the early genes of SV40 (Bonnerot et al. 1991; Chalifour et al. 1987; Chalifour et
al. 1986; Delouis et al. 1992; Ram and Schultz 1993) and polyomavirus (Melin et al. 1993), herpes simplex virus thymidine
kinase gene (Majumder et al. 1993; Martinez-Salas et al. 1989; Wiekowski
et al. 1991), adenovirus EIIa (Dooley et al. 1989), mouse ZP3 (Lira et al. 1990; Millar et al. 1991), hypoxanthine phosphoribosyl
transferase, a-actin
and hydroxymethyl glutaryl CoA reductase (Bonnerot et al. 1991; Delouis et al. 1992; Vernet et al.
1992), TATA‑box and Sp1‑dependent
promoters (Majumder et al. 1993). The most active transcription
factor identified so far in growing oocytes (Chalifour et al. 1987; Chalifour et al. 1986) to cleavage‑stage embryos (Majumder et al. 1993) is Sp1.
The responses of DNA injected into
embryonic cell nuclei reflect the normal conditions at the beginning of
mammalian development, because the injected DNA responds to the same signals
that regulate endogenous DNA replication and gene expression. Injected DNA
undergoes replication and transcription (i)
only when unique eukaryotic regulatory sequences are present, and (ii) only in cells that are competent
for that function (Majumder and DePamphilis 1994). For example, mouse oocytes are
arrested in meiosis and therefore do not replicate their own DNA. Accordingly,
oocytes do not replicate plasmid DNA injected into their nucleus, even if the
injected DNA contains a viral origin and is provided with the appropriate viral
replication proteins (Chalifour et al. 1986; Wirak et al. 1985). In contrast, plasmid DNA does
replicate when injected into 1-cell or 2-cell embryos that undergo S-phase (Wirak et al. 1985), but only when the plasmid contains
a functional viral origin and only when the cognate origin recognition protein
is present (Martinez-Salas et al. 1988).
On the other hand, oocytes do express
some of their own genes, and they also can express genes encoded by plasmids if
an appropriate promoter is present (Chalifour et al. 1987; Dooley et al. 1989). For example, the oocyte-specific
promoter for zona pellucida protein-3 provides oocyte-specific expression when
present on injected plasmid DNA (Lira et al. 1990; Millar et al. 1991; Schickler et al.
1992). DNA transcription can be analyzed
in 1-cell embryos that are arrested as they enter S‑phase by including aphidicolin
in the culture medium, because the zygotic clock still triggers zygotic gene
activation at the normal time post-fertilization. Thus, genes injected into a
pronucleus of S-phase-arrested 1-cell embryos remain
inactive for as long as 20 hours until the first zygotic genes are expressed (Martinez-Salas et al. 1989; Wiekowski et al. 1991). In contrast, plasmid-encoded genes
are expressed immediately when injected into 2-cell embryos that are actively
expressing their own cellular genes, regardless of whether these embryos are
cultured in the presence or absence of aphidicolin. Thus, we conclude that the
response of plasmid DNA injected into mammalian oocytes and embryos is not an
artifact of the experimental protocol, but accurately reflects the cell's
capacity for carrying out transcription or replication in vivo.
IV. Enhancers relieve promoter repression: a lesson
from 1-cell and 2-cell embryos
Microinjection experiments using
plasmid DNA containing a reporter gene linked to a promoter and/or an enhancer
revealed that promoters injected into the paternal pronucleus of S-phase-arrested 1-cell embryos are highly active and their
activity is not increased by linking them to enhancers. In contrast, promoters
injected in the zygotic nuclei of 2-cell embryos are strongly repressed and
this repression can be relieved by linking them to an embryo specific enhancer.
For example, the F101 enhancer can stimulate various RNA pol II promoters from
20 fold to more than 300 fold in 2-cell embryos depending on promoter strength
and the amount of DNA injected, but does not stimulate the same promoter in
1-cell embryos (Majumder and DePamphilis, 1995).
Why are the activities of promoters
so much lower in 2-cell embryos than in the paternal pronucleus of 1-cell
embryos? It is not due to changes in the requirements for transcription
factors, because site specific mutations affecting individual transcription
factor binding sites in the tk promoter show that 1-cell and 2-cell mouse
embryos utilize the same promoter elements (Majumder et al. 1993). It is also not due to a decreased
ability to utilize promoters, because arrested 2-cell and 4-cell embryos are as
effective as arrested 1-cell embryos in utilizing a variety of promoters, if
the promoters are linked to the F101 PyV enhancer (Majumder et al. 1993). Therefore, the transcriptional
capacity of 2-cell embryos is equivalent to that of 1-cell embryos. This is
more directly seen by comparing the amount of a specific transcription factor,
such as Sp1, that limits the activity of the tk promoter in both 1-cell and
2-cell embryos. Although the tk promoter is at least 20-fold more active in the
paternal pronucleus of arrested 1-cell embryos than in the zygotic nuclei of
arrested 2-cell and 4-cell embryos, the amount of Sp1 in 2‑cell embryos
is about 6-fold greater than in 1-cell embryos (Majumder et al. 1993; Worrad et al. 1994). Therefore, the reduction in the
capacity of embryos to utilize promoters observed upon formation of a 2-cell
embryo must result from the appearance of a repressor rather than the loss of
positively acting transcription factors.
This repression does not likely
result from proteins that bind to specific sequences, because it affects
different promoters and replication origins that bear little sequence homology
and that interact with different initiation factors. This repression also does
not depend on the presence of a zygotic nucleus, because it occurs in 2-cell
embryos constructed to contain diploid or haploid maternal or paternally
derived nuclei (Wiekowski et al. 1993) and in paternal pronuclei that have
been transplanted to 2-cell embryos (Henery et al. 1995). Instead, this repression appears
to be mediated by changes in chromatin structure that result, at least in part,
from factors that are present in the cytoplasm of 2-cell embryos but absent
from the cytoplasm of 1-cell embryos.
Treatment of 2-cell embryos with
butyrate or trichostatin strongly stimulates promoter activity, relieving
repression and reducing the need for enhancers (Majumder et al. 1993; Wiekowski et al. 1993). Butyrate has been found to
stimulate promoters in mammalian cells by altering the acetylated state of
chromatin structure (Grunstein 1997; Kamakaka and Thomas 1990; Tazi and Bird
1990). Butyrate rapidly blocks histone
deacetylase, thus increasing the fraction of acetylated core histones that
makes the DNA more accessible to transcription factors and reduces the ability
of nucleosomes to interact with histone H1 (Turner 1991). Two lines of evidence confirm that
the effect of butyrate on relieving repression is at the level of chromatin
structure rather than increasing the levels of transcription factors. Butyrate
has opposite effects on maternal and paternal pronuclei in 1-cell embryos
(discussed below), and does not change the pattern of endogenous protein synthesis
in 1-cell and 2-cell embryos (Wiekowski et al. 1993). The effect of
butyrate/trichostatin also correlates with composition and modification status
of histones present in the embryos as discussed below.
Thus, taken together, these results
indicate that the primary function of enhancers is to relieve promoter
repression that is observed in 2-cell embryos, and not in 1-cell embryos.
Enhancers presumably perform this function by preventing chromatin structure
from interfering with assembly of an initiation complex. To accomplish this
task, transcription factors that activate enhancers must fulfill two criteria:
(i) they must successfully compete
with chromatin structure, and (ii)
they must interact with at least one of the transcription factors that
constitute a promoter. Transcription factors that cannot compete with chromatin
structure would constitute weak
promoters that require an enhancer for full activity, whereas when
transcription factors that can compete with chromatin constitute part or all of
a promoter, the need for an enhancer to activate that promoter would decrease
accordingly. This model does not exclude a secondary role of enhancers in
facilitating formation of the initiation complex. Such a role could account for
the 2 to 3-fold stimulation of promoters in mouse 2-cell embryos by the F101
PyV enhancer above the level observed in 1-cell embryos (Majumder et al., 1993)
as well as low levels of enhancer activity sometimes observed in vitro in the absence of chromatin
assembly.
V. Enhancer function requires a specific coactivator:
a lesson from oocytes and 2-cell embryos
In summary, the studies discribed
above revealed that transcription promoters and replication origins introduced
into the nuclei of 2-cell mouse embryos undergo repression, regardless of the
origin or ploidy of the nucleus, and regardless of whether or not cells are
arrested in S-phase or allowed to continue cell division. Furthermore, this
repression can be relieved either by linking the promoter or origin-core to an
embryo responsive enhancer (e.g. F101 PyV enhancer), providing a general
transactivator (e.g. HSV ICP4 protein), or by treating the cells with butyrate.
Surprisingly, the same DNA sequences are not repressed when injected into the
paternal pronucleus of S-phase arrested 1-cell embryos; their activities are
high and they are not stimulated further by enhancers, transactivators or
butyrate. Since transplantation of the injected paternal pronucleus to a 2-cell
embryo returns the injected promoter to a repressed state that can be relieved
by enhancers, the absence of repression is not unique to paternal pronuclei,
but to the cytoplasm of 1-cell embryos. The environment of the paternal
pronucleus in a mouse 1-cell embryo is analogous to cell free systems in which
enhancers are no longer needed to activate promoters or replication origins
unless the DNA substrate is first assembled into chromatin. Thus, the question
remained: what happens when the same sequences are injected into maternal
pronucleus of a 1-cell embryo and its precursor, the maternal nucleus (germinal
vesicle) of an oocyte?
Since oocytes do not replicate DNA,
only promoters were injected into the maternal nucleus of an oocyte,
parthenogenetically activated egg, or fertilized egg (1‑cell embryo). Under
these conditions, promoters are repressed from 80 to 96% relative to the
paternal pronucleus of S‑phase arrested 1-cell embryos (Table 1), (Majumder et al. 1993; Majumder et al. 1997; Martinez-Salas
et al. 1989; Wiekowski et al. 1993). As with 2-cell embryos, repression
can be relieved by treating cells with butyrate, raising the level of promoter
activity in maternal nuclei to that observed in paternal pronuclei. This
suggests that the mechanism of repression in maternal nuclei of oocytes and
1-cell embryos is the same as in 2-cell embryos. In fact, the composition of
nascent histones in mouse oocytes are indistinguishable from those in mouse
fibroblasts, and the slight increase of promoter activity observed in maternal
pronuclei (Table 1) corresponds to
increased hyperacetylation of histone H4 (Adenot et al. 1997; Wiekowski et al. 1997). Since the cytoplasm of 1-cell
embryos does not contain repressor activity, maternal pronuclei must retain
some of the repressor that is produced in oocytes. This may be histone H1 that
is associated with cellular chromatin, but can transfer easily to chromatin
assembled onto plasmid DNA. However, in contrast to 2-cell embryos, linking the
promoter to the F101 enhancer could not relieve repression of promoter activity
in the maternal nuclei of oocytes and 1-cell embryos. Therefore, some factor is
missing in oocytes and 1‑cell embryos that is required for enhancer
function.
This missing factor is not the
transcription factor that must bind to the enhancer sequence, because oocytes
and 1-cell embryos cannot utilize enhancers even when the appropriate enhancer
activation protein is provided. In the presence of sufficient GAL4-VP16 protein
to drive a GAL4-dependent promoter at its maximum rate, a GAL4-dependent
enhancer located 600 bp upstream of the tk promoter stimulates promoter
activity only 1.5-fold in the maternal nucleus of oocytes, 2‑fold in the
maternal pronucleus and none in the paternal pronucleus of S‑phase
arrested 1-cell embryos. In contrast, the same enhancer stimulates promoter
activity at least 30-fold when injected into 2-cell embryos in the presence of
saturating amounts of GAL4-VP16 (Table 1)
(Majumder et al. 1993; Majumder et
al. 1997). Therefore, the missing factor is a
co-activator protein(s) that mediates the activity of GAL4:VP16 protein with
the transcription complex that binds to the promoter (Fig. 2). This co-activator protein is specific for enhancer
function, because the same series of Gal4 DNA binding sites located proximal to
a TATA box (i.e. Gal4-dependent promoter) functions efficiently under all
conditions. mRNA isolated from mouse embryonic stem (ES) cells and preinjected
into the cytoplasm of mouse oocytes, was able to confers enhancer function. ES
cells, like cleavage stage embryos, efficiently utilize the F101 enhancer
(Melin et al., 1993), and therefore provided a convenient source of mRNA
encoding the putative enhancer coactivator. Whether this activity is brought in
by a single molecule or a family of molecules is not known However, our
preliminary experiments show that a fraction of the nuclear extract from HeLa
cells can restore enhancer activity in oocytes (Rastelli, Zhao and Majumder,
unpublished observation). It appears that the coactivator activity mediates
protein-protein interaction between factors bound at the enhancer site and the
transcription complex bound at the promoter site. Since the chromatin structure
and enhancer function are intimately connected, the coactivator activity might
act by remodeling chromatin structure (Felsenfeld 1996; Kingston et al. 1996; Pazin and Kadonaga
1997; Struhl 1998).
VI. The appearance of promoter repression correlates
with changes in chromatin structure
Repression of promoter activity
correlates with a decrease in histone H4 hyperacetylation and the concurrent
appearance of histone H1 and H2A and H2B. Metaphase II oocyte chromatin and
sperm chromatin do not contain hyperacetylated H4 histones, as revealed by
antibody staining
Table 1.
Properties of mouse oocytes and preimplanation embryos that affect gene
expression.
|
Stage |
Nuclear origin |
Promoter repression |
Chromatin hyperacetilation |
Histone H1,H2A and H2B synthesis |
Enhancer stimulation |
Putative enhancer-specific
coactivator |
|
Oocyte |
Maternal |
+++ |
- |
++ |
- |
- |
|
1-cell embryo |
Maternal |
+ |
+ early |
- |
- |
- |
|
1-cell embryo |
Paternal |
- |
++ early |
- |
- |
- |
|
2-cell embryo |
Zygotic |
++ |
+/- |
+ |
+ |
+ |
|
4-cell embryo |
Zygotic |
+++ |
- |
++ |
++ |
++ |
This table summarizes all the data
on oocyte and preimplantation embryo properties that are relevant to explain
the difference in transcription activity among the various stages.
(Adenot et al. 1997), or by labeling of nascent H4 (Wiekowski et al. 1997). Adenot et al. showed that upon sperm
entry and throughout most of G1, the paternal chromatin in 1-cell embryos has
higher level of hyperacetylated H4. Since transcriptionally active eukaryotic
genes are associated with acetylated core histones (Turner 1991), the authors propose that
hyperacetylated paternal chromatin can preferentially recruit transcription
factors at this stage to explain the higher promoter activity. But, the levels
of hyperacetylated H4 are similar in both pronuclei during S/G2 (Adenot et al. 1997) and remain high in 2 cell embryos (Wiekowski et al. 1997) and therefore cannot explain the
promoter repression that occurs with the formation of the 2 cell embryos.
However, the beginning of promoter repression also correlates with the
beginning of histones H1, H2A and H2B synthesis in late 1-cell embryos (Wiekowski et al. 1997). The synthesis of these histones is
independent of DNA replication, DNA transcription and cell cleavage indicating
that they are translated from maternally inherited mRNAs. Antibodies directed
against somatic H1 do not detect any H1 until the late 4-cell stage (Clarke et al. 1992), suggesting that this early form of
histone H1 may represent a novel histone H1 subtype as seen in other organisms (Ohsumi and Katagiri 1991; Smith et al. 1988). Thus, it appears that promoter
repression correlates with the presence of histone H1 and the absence of
acetylation (other modification?) of core histones (Table 1).
Studies on promoter activity in vitro further support the hypothesis
that the primary role of enhancers is to prevent repression by chromatin
structure. Enhancers have little, if any, effect on DNA replication (Prives et al. 1987) or transcription discussed in (Majumder et al. 1993) when
they are assayed in cell free systems that do not assemble chromatin, but
enhancers can stimulate promoters in cell free systems when the DNA is packaged
into chromatin (Paranjape et al. 1994; Sheridan et al. 1995). Nucleosome assembly can interfere
with the activity of some, but not all, proteins that are required for
initiation of transcription or DNA replication (Workman et al. 1991).
Although it appears that histone H1
and acetylation of core histone are involved in chromatin-mediated repression
their relative contribution in the process is yet unclear . In particular, the
role of H1 on general transcription activity is unknown. In-vitro binding of
histone H1 to chromatin in stoichiometric conditions does not have repressive
effects (Howe et al. 1998; Sandaltzopoulos
et al. 1994). At the same time, in vivo
overproduction of mouse histone variant H1(0) results in repression of
transcript levels of all polymerase II genes tested. (Brown et al. 1997). It is therefore possible that the
maternal H1 variant is responsible for promoter repression in 2 cell embryos.
In later stages, repression could be maintained because the level of
hyperacetylated H4 drops starting with the 4-cell embryos (Wiekowski et al. 1997).
VII. A Role for DNA replication in relieving promoter
repression
Two types of repression have been
observed in 2-cell embryos: the "reversible" repression described
above that can be relieved by enhancers when DNA is injected into 2-cell
embryos, and an "irreversible" repression that occurs when DNA is
injected into either pronucleus of a normally developing 1-cell embryo, and the
injected embryo then undergoes mitosis to form a 2-cell embryo. Under these
conditions, the injected promoter or replication origin is
"irreversibly" repressed in that its activity cannot be restored
either with butyrate or enhancers (Wiekowski et al., 1993; Henery et al.,
1995). This phenomenon is unique to the first cell cycle since plasmid DNA
injected into 2-cell embryos undergo reversible repression whether or not the
injected 2-cell embryos is arrested in S-phase or continues cell division to
produce 4‑cell and then 8-cell embryos. What happens to DNA between
completion of S‑phase in a 1-cell embryo and formation of a 2-cell embryo
that results in "irreversible" repression of injected plasmid DNA,
but not of endogenous cellular DNA? One possibility is that the injected DNA is
lost to the cytoplasm when the pronucleus, but not a zygotic nucleus, undergoes
mitosis. This does not appear to be the case since transplantation of the
injected pronucleus to a 2-cell embryo that then undergoes mitosis exhibits
reversible repression of the plasmid encoded reporter gene. Instead, we suggest
that DNA in early 1-cell embryos is subjected to repression before enhancer
activation factors become available when zygotic genes are expressed. Once
repression has been established, DNA replication may be required in order to
displace repressor (histones?) so that transcription factors can bind to
promoter and enhancer sequences (Wolffe 1991) (Fig.
2). Plasmid expression vectors, such as the ones used in these experiments,
do not replicate when injected into mouse embryos (DePamphilis 1997), presumably because they lack a
suitable replication origin. However, the 1-cell embryo's genome undergoes at
least one round of replication prior to any zygotic gene transcription, an
event that may be required to restore the zygotic genome to a transcriptionally
competent state. DNA in 2-cell embryos competes for binding to both repressor
and enhancer specific proteins (Fig. 2);
the result of this competition determines the fraction of molecules that are
transcriptionally active. Thus, enhancer stimulated promoter activity is
greater when plasmid DNA is injected into late 2-cell embryos that progress to
the 4-cell stage than in early 2-cell embryos that are arrested in S-phase (Henery et al. 1995) (Table 1).
In a recent paper Forlani et al. (Forlani et al. 1998) found that when plasmid DNA
containing the intronic sequences of the human HPRT gene as an enhancer element
attached to a ÒPytkÓ promoter driving a reporter gene is microinjected in
1-cell embryos arrested by aphidicolin at a time that corresponds to post-DNA
replication, the HPRT sequence can stimulate the ÒPytkÓ promoter 4-5 fold as
compared to the microinjected construct without the HPRT sequence. This
observation led them to propose that acquisition of enhancer function requires
the first round of DNA replication. However, the ÒPytkÓ promoter activity seen
in
Figure 2. A working model showing the
repression of promoters and replication origins by chromatin structure and the
role of enhancers. Core histones and transcription/replication proteins
(including enhancer activation proteins) compete to bind to the plasmid DNA
microinjected into mouse oocytes and early embryos. Depending on their relative
affinities for DNA, there is a dynamic equilibrium between DNA bound to core
histones and DNA bound to various transcription/replication factors. In the
presence of histone H1, DNA bound to core histones can then interact with them,
resulting in a condensed chromatin structure and a repressed state. The
repressive action of histone H1 can be blocked by acetylation of core histones.
Sodium butyrate or trichostatin are known to inhibit histone deacetylases, and
thus increase the fraction of acetylated core histones, causing stimulated
transcription. On the other hand, the equilibrium can be shifted to the other
direction where DNA bound to transcription/replication factors and enhancer
activation proteins can interact with the enhancer specific coactivator
resulting in the prevention of repression and the formation of an active state.
DNA replication at each cell division may provide the cell with a chance to
re-establish the equilibrium between repressed and unrepressed states.
1-cell embryos arrested after DNA
replication is similar in magnitude, when compared to promoter activity seen in
1-cell embryos arrested before DNA replication. Thus, the low level of the HPRT
sequence dependent stimulation appears not to be due to the release of promoter
repression (primary role of enhancer function), but perhaps due to other
secondary roles of enhancers as discussed above. This observation could also be
explained by the effect of the additional transcription factor binding sites
provided by the HPRT sequence on the promoter strength. Furthermore, it is also
interesting to note that the experiments described in this paper use ÒPytkÓ
promoter that contains the tk promoter and the polyoma F101 enhancer (Py). Thus
the Pytk promoter possibly represents not the promoter activity alone but the
combined effect of promoter and enhancer activities. Thus, taken together,
these results indicate that zygotic gene expression in 2-cell embryos and not
the first round of DNA replication is necessary for the acquisition of the
ability to utilize enhancers in mammals, suggesting that one or more enhancer
activation proteins, like the enhancer specific coactivator, is produced at
this time.
VIII. The lack of enhancer function is unique to
oocytes and fertilized eggs
The lack of enhancer function in
oocytes raises the question whether the absence of enhancer function is a
unique property of oocytes or a general property of other terminally
differentiated cells. To explore this question, transcription activity was
examined in terminally differentiated hNT neurons that ceased cell-division
like oocytes, and their precursor, undifferentiated NT2 stem cells. The results
showed that both NT2 and hNT cells could utilize Gal4VP16- and Sp1-dependent
enhancers as well as promoters (Lawinger et al. 1998). Thus, the lack of enhancer
specific coactivator activity, and the corresponding lack of enhancer function,
appears to be unique to oocytes and fertilized eggs, suggesting that it
provides a safeguard against premature activation of genes prior to ZGE.
How does chromatin mediated
repression and enhancer utilization help to regulate gene expression at the
beginning of mammalian development? The onset of transcription during mouse
development is regulated by a time dependent mechanism (zygotic clock), and
takes place about 40 hours postfertilization, a time when a normally developing
embryo is at the 2‑cell stage. This stage of development also coincides
with the onset of major chromatin repression of promoters (Majumder and
DePamphilis, 1995). The paternal genome in sperm comes with protamines, whereas
the maternal genome in eggs comes with a normal complement of core histones
(Zirkin et al., 1989; Nonchev and Tsanev, 1990). After fertilization, they
undergo chromatin remodeling to establish the zygotic genome at the 2-cell
stage. This process of remodeling probably generates DNA that is not complexed
with either histones or protamines (Rodman et al., 1981), and exposes promoters
to transcription factors. Thus the zygotic clock may provide a mechanism to
ensure no spurious transcription during the remodeling period. On the other
hand, after the zygotic remodeling, the chromatin mediated repression of most
promoters in 2-cell embryos may provide a mechanism for enhancer-mediated
tissue specific transcription of genes during development and growth. Delaying
expression of the enhancer specific coactivator prior to zygotic gene
expression provides an additional mechanism for preventing inappropriate
transcription of genes destined for expression in specific cell types.
The same mechanisms of
transcriptional control that initiates mouse development also seem to occur in
other animals. In mammals other than mice, transcription is delayed until the
2-cell or 16-cell stage, presumably by the same zygotic clock mechanism. Thus,
the zygotic gene expression begins at the 2-cell stage in hamsters, the 4-cell
stage in pigs, the 4- to 8-cell stage in humans, and the 8- to 16-cell stage in
sheep, rabbits and cows (Telford et al., 1990; Seshagiri et al., 1992; Schulz,
1993). Whether or not repression of promoter activities appears at the 2-cell
stage in these mammals, or is delayed until the same stage that transcription
begins, remains to be seen. The S-phase of a 2-cell mouse embryo appears
equivalent to the 6th cleavage stage in Xenopus
where synthesis of heterogeneous, non-ribosomal mRNA is first detected. The G2‑phase
of a 2-cell mouse embryo appears equivalent to the 12th cleavage stage in Xenopus where the major onset of RNA
polymerase II and III transcription occurs (the midblastula transition, MBT,
Kimelman et al., 1987; Shiokawa et al., 1989). The activity of
promoter/enhancer sequences injected into Xenopus
eggs is generally delayed until the MBT although they appear to exhibit a low
but constant rate of gene expression per cell prior to the MBT (Shiokawa et
al., 1990). Activation of transcription at the MBT can require specific
enhancers (Krieg and Melton, 1987), analogous to the need for an enhancer to
activate promoters in 2-cell mouse embryos. The MBT also marks the appearance
of histone H1 mediated repression of oocyte specific genes such as 5S RNA
(Wolffe, 1989; Ohsumi and Katagiri, 1991), analogous to the repression observed
upon formation of 2-cell mouse embryos. Furthermore, analogous stage-specific
acquisition of specific transcriptional coactivators for enhancer function may
also occur at the MBT (Xu et al., 1994).
Acknowledgements
This work was supported in part by
grants to S. M. from the Pediatric Brain Tumor Foundation of the US,
Association for Research of Childhood Cancer, and the National Institutes of
Health (GM53454). L.R. is supported by the American Brain Tumor Association 25th
Anniversary Translational Grant.
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